PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14889A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 289aa    MW: 31850 Da    PI: 8.5681
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14889AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd++l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Oropetium_20150105_14889A 14 KGAWTKEEDQRLIAYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                               79******************************99************97 PP

2Myb_DNA-binding58.31.7e-1867111147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg++T+eEdel+++ ++++G++ W++Ia +++ gRt++++k++w+++
  Oropetium_20150105_14889A  67 RGNFTEEEDELIIKFHELFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                                89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.112961IPR017930Myb domain
SuperFamilySSF466896.11E-3013108IPR009057Homeodomain-like
SMARTSM007174.6E-141363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-241568IPR009057Homeodomain-like
CDDcd001674.73E-121661No hitNo description
PROSITE profilePS5129428.68462116IPR017930Myb domain
SMARTSM007174.0E-1866114IPR001005SANT/Myb domain
PfamPF002497.9E-1767111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2869116IPR009057Homeodomain-like
CDDcd001671.59E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRSPCCEQA HTNKGAWTKE EDQRLIAYIK THGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK FHELFGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLARG  120
IDPQTHRPVN AVAAAAPAQQ PQQHFQLPAQ QTHFAASPGQ PQLQQDHFAG VLSHSPEGAC  180
SHSSDDERRS ATPPPPTRPR HLDIDLNLSI SLAPYQPPEE SGDKPLKQVL PAMSTTTTAG  240
NINATPVCLC LNSLGYRPGI DCVCSGGASS RQQEQSFTSS ALLQRPLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-30141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0547581e-159BT054758.1 Zea mays full-length cDNA clone ZM_BFb0028G03 mRNA, complete cds.
GenBankKJ7267961e-159KJ726796.1 Zea mays clone pUT2285 MYB transcription factor (MYB64) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978868.11e-133PREDICTED: myb-related protein Zm38
SwissprotP813932e-90MYB08_ANTMA; Myb-related protein 308
TrEMBLK3ZJI11e-133K3ZJI1_SETIT; Uncharacterized protein
STRINGSi026734m1e-133(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-88myb domain protein 4